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ens_weights_no_intercept
|
Ensemble pathway weights |
|
gene_meta
|
Gene metadata for all 978 measured L1000 genes |
|
iPAS_bar()
|
Produce bar plots of top iPAS pathways |
|
iPAS_density()
|
Produce a density plot of iPAS permutation scores for a given pathway |
|
iPAS_density_facet()
|
Produce density plots of iPAS permutation scores for a given pathway for
multiple experiments |
|
iPAS_enrich()
|
Calculate iPAS pathway scores for a given input signature |
|
iPAS_heatmap()
|
Produce a heatmap of iPAS pathway scores |
|
iPAS_list
|
Individual pathway activity signatures (iPAS) |
|
iPAS_score_perm()
|
Create a null distribution of iPAS pathway scores using permutations |
|
kegg_meta
|
KEGG pathway metadata |
|
load_iPAS()
|
Load integrative Pathway Activity Signatures (iPAS) |
|
load_iPAS_ensemble()
|
Load Ensemble Pathway Activity Signatures (iPAS) |
|
rnaseq_input_rand
|
Random RNA-seq data to use for examples |