Produce a heatmap of iPAS pathway scores

Produce a heatmap of iPAS pathway scores

iPAS_heatmap(
  res,
  row_fontsize = 6,
  col_fontsize = 12,
  short_names = TRUE,
  pathway_names = c("names", "identifiers", "both"),
  category = c("Signaling", "Cancer", "Disease", "Other", "All")
)

Arguments

res	output object from the iPAS_enrich function
row_fontsize	font size for the row names (pathways), default is 6.
col_fontsize	font size for the column names (input signatures), default is 12.
short_names	if TRUE, show shortened pathway names, not including " - Homo sapiens (human)" at the end
pathway_names	whether to show the names of KEGG pathways (e.g. "mTOR signaling pathway - Homo sapiens (human)"), their unique identifiers (e.g. "hsa04150") or both. "names" shows pathway names, "identifiers" shows only ID numbers, "both" shows both, "none" shows no names.
category	the categories of KEGG pathways for which to calculate iPAS scores. We categorize pathways as "Disease", "Other", "Signaling", or "Cancer". By default all categories/pathways are included.